Microarrays : Volume 2, Applications and Data Analysis

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This second part in the two-volume work Microarrays details applications and data analysis. It includes insight into non-mammalian vertebrate systems, processes and protocols for high quality glass-based microarrays. Coverage includes applications in DNA, peptide, antibody and carbohydrate microarraying, oligonucleotide microarrays generated from hydrolysis PCR probe sequences, microarray platforms in clinical practice, and screening of cDNA libraries on glass slide microarrays. Authors in this volume also discuss protocols for predicting DNA duplex stability on oligonucleotide arrays and integrated analysis of microarray results.
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Product details

  • Hardback | 452 pages
  • 157.48 x 228.6 x 30.48mm | 793.78g
  • Totowa, NJ, United States
  • English
  • Revised
  • 2nd ed. 2007
  • 12 Tables, black and white; 120 Illustrations, black and white; XX, 452 p. 120 illus.
  • 1588299449
  • 9781588299444

Table of contents

Table of Contents
Microarray Technology
Volume 2 - Applications and Data Analysis

1. The Use of Microarray Technology in Non-mammalian Vertebrate Systems
Conor W. Sipe and Margaret S. Saha

2. Quality Considerations and Selection of Surface Chemistry for Glass-Based DNA, Peptide, Antibody, Carbohydrate, and Small Molecule Microarrays.
Jens Sobek*, Catharine Aquino and Ralph Schlapbach

3. Optimization Workflow for the Processing of High Quality Glass-Based Microarrays. Application in DNA, Peptide, Antibody, and Carbohydrate Microarraying.
Jens Sobek*, Catharine Aquino and Ralph Schlapbach

4. Processing Protocols for High Quality Glass-Based Microarrays. Application in DNA, Peptide, Antibody and Carbohydrate Microarraying.
Jens Sobek*, Catharine Aquino and Ralph Schlapbach

5. Specific Detection of Bacterial Pathogens Using Oligonucleotide Microarrays Generated from Hydrolysis PCR Probe Sequences
Philip J.R.Day

6. Uses of Microarray Platforms in Cancer: A Correlative Study between Genomic Copy Number Changes and Their Expression at mRNA and Protein Level
Fahd Al-Mulla

7. Microarray Technology for Use in Molecular Epidemiology
Suzanne D. Vernon and Toni Whistler

8. Utilization of Microarray Platforms in Clinical Practice: An Insight on the Preparation and Amplification of Nucleic Acids from Frozen and Fixed Tissues
Fahd Al-Mulla

9. A Microarray Based Method to Profile Global microRNA Expression in Human and Mouse
Ranjan Perera

10. Genotyping of Single Nucleotide Polymorphisms by Arrayed Primer Extension
Scott J. Tebbutt

11. Protein Chip for Detection of DNA Mutations
Xian-En Zhang and Li-Jun Bi

12. Screening of cDNA Libraries on Glass Slide Microarrays.
Dave K Berger, Bridget G. Crampton, Ingo Hein and Wiesner Vos

13. Automated Target Preparation Methods for Affymetrix Gene Expression Cartridges
Handy Yowanto

14. Tumor-Stroma Interactions of Metastatic Prostate Cancer Cells Lines - Analysis Using Microarrays
Nicolas Wernert, Annette Kaminski, El-Mustapha Haddouti and Jens Claus Hahne

15. Identification of Small Molecule Targets on Functional Protein Microarrays
Michael Salcius, Gregory A. Michaud, Berry Schweitzer and Paul F. Predki

16. Quantification of Small Molecules Using Microarray Technology
Martin Dufva and Claus BV Christensen

17. Antibody-microarrays on Hybrid Polymeric Thin Film Coated Slides for Multiple-protein Immunoassays
Xichun Zhou and Jizhong Zhou

18. Overprint Immunoassay Using Protein A Microarrays
Robert S. Matson, Raymond C. Milton, Jang B. Rampal, Tom S. Chan, and Michael C. Cress

19. Paraflo Biochip for Nucleic Acid and Protein Analysis
Qi Zhu, Ailing Hong, Nijing Sheng, Xiaolin Zhang, Anna Matejko, Kyu-Yeon Jun, Onnop Srivannavit, Erdogan Gulari, Xiaolian Gao and Xiaochuan Zhou

20. Application of Protein Chip Array Profiling in Serum Biomarker Discovery for Patients Suffering from Severe Acute Respiratory Syndrome (SARS)
Timothy T. C. Yip, William C. S. Cho, Wai-Wai Cheng, Johnny W. M. Chan, Victor W. S. Ma, Tai-Tung Yip,Christine Yip, Roger K. C. Ngan and Stephen C. K. Law

21. Volumetric Mass Spectrometry Protein Arrays
Dobrin Nedelkov, Urban A. Kiernan, Eric E. Niederkofler, Kemmons A. Tubbs and Randall W. Nelson

22. Microarray Data Classified by Artificial Neural Networks
Roland Linder, Tereza Richards, Mathias Wagner

23. Methods for Microarray Data Analysis
Veronique De Bruyne, Fahd Al-Mulla, Bruno Pot

24. Predicting DNA Duplex Stability on Oligonucleotide Arrays
Arnold Vainrub, Norha Deluge, Xiaolin Zhang, Xiaochuan Zhou, and Xiaolian
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