Marine Genomics
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Marine Genomics : Methods and Protocols

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Description

This volume presents the latest protocols for both laboratory and bioinformatics based analyses in the field of marine genomics. The chapters presented in the book cover a wide range of topics, including the sampling and genomics of bacterial communities, DNA extraction in marine organisms, high-throughput sequencing of whole mitochondrial genomes, phylogenomics, SNP discovery, SNP-arrays for species identification, digital PCR-based quantification methods, environment DNA for invasive species surveillance and monitoring, microarrays for the detection of waterborne pathogens, DNA barcoding of marine biodiversity, metabarcoding protocols for marine eukaryotes, analytical protocols for the visualization of eukaryotic diversity, and applications for genomic data to benthic indices for environmental monitoring. Written in the highly successful Methods in Molecular Biology series format, chapters include introduction to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Cutting-edge and thorough, Marine Genomics: Methods and Protocols is a valuable resource for researchers, students, and policy makers in the field of marine biology.show more

Product details

  • Hardback | 253 pages
  • 178 x 254 x 16mm | 696g
  • Humana Press Inc.
  • Totowa, NJ, United States
  • English
  • 1st ed. 2016
  • 24 Illustrations, color; 22 Illustrations, black and white; X, 253 p. 46 illus., 24 illus. in color.
  • 1493937723
  • 9781493937721
  • 1,259,443

Back cover copy

This volume presents the latest protocols for both laboratory and bioinformatics based analyses in the field of marine genomics. The chapters presented in the book cover a wide range of topics, including the sampling and genomics of bacterial communities, DNA extraction in marine organisms, high-throughput sequencing of whole mitochondrial genomes, phylogenomics, SNP discovery, SNP-arrays for species identification, digital PCR-based quantification methods, environment DNA for invasive species surveillance and monitoring, microarrays for the detection of waterborne pathogens, DNA barcoding of marine biodiversity, metabarcoding protocols for marine eukaryotes, analytical protocols for the visualization of eukaryotic diversity, and applications for genomic data to benthic indices for environmental monitoring. Written in the highly successful Methods in Molecular Biology series format, chapters include introduction to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Marine Genomics: Methods and Protocols is a valuable resource for researchers, students, and policy makers in the field of marine biology.show more

Table of contents

1. Sampling of Riverine or Marine Bacterial Communities in Remote Locations: From Field to PublicationKatja Lehmann2. DNA Extraction Protocols for Whole Genome Sequencing in Marine OrganismsMarina Panova, Henrik Aronsson, R. Andrew Cameron, Peter Dahl, Anna Godhe, Ulrika Lind, Olga Ortega-Martinez, Ricardo Pereyra, Sylvie V. M. Tesson, Anna-Lisa Wrange, Anders Blomberg, Kerstin Johannesson3. High-Throughput Sequencing of Complete Mitochondrial GenomesAndrew George Briscoe, Kevin Peter Hopkins, and Andrea Waeschenbach4. Phylogenomics Using Transcriptome DataJohanna Taylor Cannon and Kevin Michael Kocot5. SNP Discovery Using Next Generation Transcriptomic SequencingPierre de Wit6. SNP-Arrays for Species Identification in SalmonidsRoman Wenne, Agata Drywa, Matthew Kent, Kristil Kindem Sundsaasen, Sigbjorn Lien7. The Next Generation PCR-Based Quantification Method for Ambient Waters: Digital PCRYiping Cao, John F. Griffith, and Stephen B. Weisberg8. Using Environmental DNA for Invasive Species Surveillance and MonitoringAndrew R. Mahon and Christopher L. Jerde9. Microarrays/DNA Chips for the Detection of Waterborne Pathogensshow more